NEW YORK, Feb 29 (Reuters) - The U.S. State Department released the final batch of Hillary Clinton's emails on Monday from her time at the agency's helm, bringing the final tally of emails it says contain classified information to more than 2,000.
The department has been regularly releasing batches of her work emails in keeping with a judge's order. But Monday's release of the final 1,700 messages does not end the controversy and legal uncertainty dogging Clinton's Democratic presidential campaign since her use of a private email server came to light a year ago.
Republican rivals in the battle for the Nov. 8 election have cited the email controversy in saying Clinton, the Democratic front-runner, is unfit for the presidency.
Clinton, secretary of state from 2009 to 2013, has said her email arrangement broke no rules and that she will be vindicated.
One of the newly released exchanges shows Clinton and Jake Sullivan, one of her closest aides, in a discussion now entirely censored as "secret," the second-highest level in the government's three-tier classification system.
See images of Clinton on the campaign trail:
Hillary Clinton's 2016 campaign
US State Department releases final batch of Clinton emails
BALTIMORE, MD - APRIL 10: Democratic presidential candidate Hillary Clinton holds a campaign rally at City Garage April 10, 2016 in Baltimore, Maryland. Voters will head to polling places for Maryland's presidential primary April 26. (Photo by Chip Somodevilla/Getty Images)
Democratic U.S. presidential candidate Hillary Clinton laughs as she listens to Representative Steve Israel (D-NY) speak on a gun control panel in Port Washington, New York April 11, 2016. REUTERS/Lucas Jackson
NEW YORK, NY - APRIL 09: Democratic presidential candidate Hillary Clinton holds a Latino organizing event on April 9, 2016 while campaigning in the Brooklyn Borough of New York City. The New York Democratic primary is scheduled for April 19th. (Photo by Andrew Renneisen/Getty Images)
SPRINGFIELD, MA - FEBRUARY 29: Democratic presidential candidate former Secretary of State Hillary Clinton speaks during a 'Get Out The Vote' rally at the Lyman & Merrie Wood Museum of Springfield History on February 29, 2016 in Springfield, Massachusetts. Hillary Clinton is campaigning in Massachusetts and Virginia ahead of Super Tuesday. (Photo by Justin Sullivan/Getty Images)
BOSTON, MA - Former Secretary of State Hillary Clinton speaks to supporters at the Old South Meeting Hall during a rally in Boston, Massachusetts on Monday February 29, 2016. (Photo by Melina Mara/The Washington Post via Getty Images)
MINNEAPOLIS, MN - MARCH 01: Democratic presidential candidate former Secretary of State Hillary Clinton greets patrons at Mapps Coffee on March 1, 2016 in Minneapolis, Minnesota. Hillary Clinton is campaigning in Minnesota as Super Tuesday voting takes place in 12 states. (Photo by Justin Sullivan/Getty Images)
MOUNT VERNON, IOWA - OCTOBER 7: Former Secretary of State Hillary Clinton speaks to voters during an outdoor town hall meeting at Cornell College in Mount Vernon, Iowa on Wednesday October 7, 2015. (Photo by Melina Mara/The Washington Post via Getty Images)
MUSCATINE, IOWA - OCTOBER 6: Former Secretary of State Hillary Clinton speaks to a voter before leaving a farm in Muscatine, Iowa on Tuesday October 6, 2015. (Photo by Melina Mara/The Washington Post via Getty Images)
MANCHESTER, NH - OCTOBER 05: Democratic presidential candidate Hillary Rodham Clinton holds a town hall meeting at the Manchester Community College on October 5, 2015 in Manchester, New Hampshire. Clinton spoke about the need for gun control on the wake of a mass shooting at another community college in Oregon. (Photo by Alfredo Sosa/The Christian Science Monitor via Getty Images)
DAVIE, FL - OCTOBER 02: Democratic presidential candidate Hillary Clinton speaks about gun control during her campaign stop at the Broward College Ã Hugh Adams Central Campus on October 2, 2015 in Davie, Florida. Hillary Clinton continues to campaign for the nomination of the Democratic Party as their presidential candidate. (Photo by Joe Raedle/Getty Images)
WASHINGTON, DC - SEPTEMBER 19: Hillary Clinton attends the Phoenix Awards Dinner at the 45th Annual Legislative Black Caucus Foundation Conference at Walter E. Washington Convention Center on September 19, 2015 in Washington, DC. (Photo by Earl Gibson III/Getty Images)
MANCHESTER, NH - SEPTEMBER 19: Democratic presidential candidate Hillary Clinton claps on stage during the New Hampshire Democratic Party Convention at the Verizon Wireless Center on September 19, 2015 in Manchester, New Hampshire. Challenger for the democratic vote Sen. Bernie Sanders (I-VT) has been gaining ground on Clinton in Iowa and New Hampshire. (Photo by Scott Eisen/Getty Images)
PORTLAND, ME - SEPTEMBER 18: Hillary Clinton brings her Democratic presidential campaign to Maine for the first time, speaking at King Middle School. Clinton is welcomed as she is introduced at the event. (Photo by Derek Davis/Portland Press Herald via Getty Images)
CEDAR RAPIDS, IA - SEPTEMBER 7: Democratic Presidential hopeful Hillary Clinton takes time to meet supporters and take photos at the Annual Hawkeye Labor Council AFL-CIO Labor Day picnic on September 7, 2015 at Hawkeye Downs in Cedar Rapids, Iowa. Clinton spent a busy Labor Day weekend in Iowa, meeting supporters throughout the state while trying to maintain a lead over Bernie Sanders for the Democratic nomination. (Photo by David Greedy/Getty Images)
US Democratic presidential candidate Hillary Clinton takes part in a discussion after speaking about the Iran nuclear deal at the Brookings Institution in Washington, DC, on September 9, 2015. Clinton expressed firm support for the nuclear accord with Iran, calling it flawed but still strong. Clinton added that the agreement must be strictly enforced and said that if elected president next year, she would not hesitate to use military force if Iran fails to live up to its word and tries to develop a bomb. AFP PHOTO/NICHOLAS KAMM (Photo credit should read NICHOLAS KAMM/AFP/Getty Images)
PORTSMOUTH, NH - SEPTEMBER 5: Democratic presidential candidate Hillary Clinton and U.S. Senator Jeanne Shaheen take an off the schedule stop in the River Run Bookstore before shaking hands with onlookers on September 5, 2015 in Portsmouth, New Hampshire. (Photos by Charles Ommanney/The Washington Post via Getty Images)
PORTSMOUTH, NH - SEPTEMBER 5: Democratic Presidential candidate Hillary Clinton receives an endorsement from U.S. Senator Jeanne Shaheen (D-NH) September 5, 2015 in Portsmouth, New Hampshire. Clinton attended a Women for Hillary event at Portsmouth High School. (Photo by Darren McCollester/Getty Images)
PORTSMOUTH, NH - SEPTEMBER 5: Democratic Presidential candidate Hillary Clinton walks downtown Portsmouth and takes pictures with people September 5, 2015 in Portsmouth, New Hampshire. Clinton attended a Women for Hillary event at Portsmouth High School earlier in the day and received an endorsement from U.S. Senator Jeanne Shaheen (D-NH). (Photo by Darren McCollester/Getty Images)
LAS VEGAS, NEVADA - AUGUST 18: Former Secretary of State Hillary Clinton answers questions from journalists after speaking to north Las Vegas voters at a town hall meeting in Las Vegas, on Tuesday, August 18, 2015. The former Secretary was answering questions about emails sent and received a private server system, now in question, while she was the Secretary of State. (Photo by Melina Mara/The Washington Post via Getty Images)
UNITED STATES - August 15: Democratic presidential candidate Hillary Rodham Clinton greets fairgoers as she tours the Iowa State Fair in Des Moines, Iowa, on Saturday, August 15, 2015. (Photo By Al Drago/CQ Roll Call)
CARROLL, IA - JULY 26: Democratic presidential hopeful and former Secretary of State Hillary Clinton speaks to guests gathered for a house party on July 26, 2015 in Carroll, Iowa. Although Clinton leads all other Democratic contenders, a recent poll had her trailing several of the Republican candidates in Iowa. (Photo by Scott Olson/Getty Images)
CHICAGO, IL - MAY 20: Democratic presidential hopeful and former Secretary of State Hillary Clinton arrives for a meeting with parents and child care workers at the Center for New Horizons on May 20, 2015 in Chicago, Illinois. Clinton arrived in Chicago after campaigning Monday and Tuesday in Iowa. (Photo by Scott Olson/Getty Images)
LAS VEGAS, NV - MAY 05: Democratic presidential candidate and former U.S. Secretary of State Hillary Clinton (C) poses with students and faculty after speaking at Rancho High School on May 5, 2015 in Las Vegas, Nevada. Clinton said that any immigration reform would need to include a path to 'full and equal citizenship.' (Photo by Ethan Miller/Getty Images)
NEW YORK, NY - APRIL 23: Hillary Rodham Clinton (L) and actress Maggie Gyllenhaal attend the 2015 DVF Awards at United Nations on April 23, 2015 in New York City. (Photo by Michael Stewart/FilmMagic)
NEW YORK, NY - APRIL 29: Democratic presidential hopeful and former Secretary of State Hillary Clinton speaks during the David N. Dinkins Leadership and Public Policy Forum at Columbia University April 29, 2015 in New York City. Clinton addressed the unrest in Baltimore, called for police body cameras and a reform to sentencing. (Photo by Kevin Hagen/Getty Images)
Hillary Clinton announced her campaign for president on Sunday April, 12, 2015 with a video on YouTube.
(Screenshot from YouTube)
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The messages, sent on June 7, 2012, bear the subject "Khar - where we are" - likely a reference to Hina Rabbani Khar, Pakistan's foreign minister. The previous day, Pakistan had renewed its insistence that the United States apologize for an air attack that killed 24 Pakistani soldiers.
All told, classified information appears in 2,093 of the 30,300 work emails and attachments Clinton's lawyers returned to the department in 2014, including 261 such emails released on Monday. That information is obscured with white boxes in the public copies.
The government forbids sending or storing classified information outside secure, government-controlled channels. The FBI has taken the server and is investigating with U.S. Justice Department attorneys whether laws were broken through the unusual arrangement.
The State Department's inspector general and at least two Republican-led congressional committees are conducting similar inquiries.
The State Department is investigating how much of the information in the more than 2,000 emails marked as classified was classified at the time they were sent. The vast majority of those messages - 2,028 - contain information classified at the "confidential" level, the lowest, including scores sent by Clinton herself.
A further 65 contain "secret" information, including at least one written by Clinton, while 22 contain "top-secret" information from U.S. intelligence agencies, which have been entirely withheld from release.
FIGHT FOR ACCESS
Members of the public are still fighting the department in court for access to thousands of public records connected to some of Clinton's closest aides. Last week, a federal judge granted a request by a conservative group suing the State Department under open records laws to seek sworn testimony from department officials and Clinton aides to see if the arrangement was intended to thwart public access to government records.
Clinton's staff has accused the government of overclassifying, and attribute the large number of emails now marked as classified to an "interagency" dispute between the State Department and intelligence agencies.
At most, only a few dozen of the 2,000 classified emails included information from intelligence agencies, according to several people familiar with those agencies' analyzes of the emails. The vast majority of the classified information originated with State Department ambassadors and employees, including Clinton herself.
State Department lawyers told a federal judge last week they still did not know who in the government authorized Clinton's email arrangement or why. Clinton has said the arrangement was for her convenience, but that she now regrets it.
The Justice Department, seeking to rebut suggestions that President Barack Obama's administration may have inappropriate influence on its investigation, has not briefed the White House on its progress, Attorney General Loretta Lynch said on Monday.